276 References McIlroy, S. J., Leu, A. O., Zhang, X., Newell, R., Woodcroft, B. J., Yuan, Z., Hu, S., & Tyson, G. W. (2023). Anaerobic methanotroph ‘Candidatus Methanoperedens nitroreducens’ has a pleomorphic life cycle. Nature Microbiology, 8, 321-331. https://doi.org/10.1038/s41564-02201292-9 McMurdie, P. J., & Holmes, S. (2013). phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data. PLoS ONE, 8(4), Article e61217. https:// doi.org/10.1371/journal.pone.0061217 Mehrshad, M., Lopez-Fernandez, M., Sundh, J., Bell, E., Simone, D., Buck, M., BernierLatmani, R., Bertilsson, S., & Dopson, M. (2021). Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater. Nature Communications, 12(1), Article 4253. https://doi.org/10.1038/s41467-021-24549-z Melaniuk, K., Sztybor, K., Treude, T., Sommer, S., & Rasmussen, T. L. (2022). Influence of methane seepage on isotopic signatures in living deep-sea benthic foraminifera, 79° N. Scientific Reports, 12(1), 1169. https://doi.org/10.1038/s41598-022-05175-1 Meng, H., Zhang, X., Zhou, Z., Luo, L., Lan, W., Lin, J.-G., Li, X.-Y., & Gu, J.-D. (2021). Simultaneous occurrence and analysis of both anammox and n-damo bacteria in five fullscale wastewater treatment plants. International Biodeterioration & Biodegradation, 156, Article 105112. https://doi.org/10.1016/j.ibiod.2020.105112 Menzel, P., Ng, K. L., & Krogh, A. (2016). Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nature Communications, 7(1), 11257. https://doi.org/10.1038/ ncomms11257 Merino, S., & Tomás, J. M. (2014). Gram-negative flagella glycosylation. International Journal of Molecular Sciences, 15(2), 2840-2857. https://doi.org/10.3390/ijms15022840 Metcalfe, K. S., Murali, R., Mullin, S. W., Connon, S. A., & Orphan, V. J. (2021). Experimentallyvalidated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy. The ISME Journal, 15(2), 377-396. https://doi. org/10.1038/s41396-020-00757-1 Meulepas, R. J., Jagersma, C. G., Gieteling, J., Buisman, C. J., Stams, A. J., & Lens, P. N. (2009). Enrichment of anaerobic methanotrophs in sulfate‐reducing membrane bioreactors. Biotechnology and Bioengineering, 104(3), 458-470. https://doi.org/10.1002/bit.22412 Meyerdierks, A., Kube, M., Kostadinov, I., Teeling, H., Glöckner, F. O., Reinhardt, R., & Amann, R. (2010). Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group. Environmental Microbiology, 12(2), 422-439. https://doi.org/10.1111/j.14622920.2009.02083.x Middelburg, J., & Levin, L. (2009). Coastal hypoxia and sediment biogeochemistry. Biogeosciences, 6(7), 1273-1293. https://doi.org/10.5194/bg-6-1273-2009 Milucka, J., Kirf, M., Lu, L., Krupke, A., Lam, P., Littmann, S., Kuypers, M. M. M., & Schubert, C. J. (2015). Methane oxidation coupled to oxygenic photosynthesis in anoxic waters. The ISME Journal, 9(9), 1991-2002. https://doi.org/10.1038/ismej.2015.12
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